Fusion Detection with JAFFAL or other

[danhtruong]

Ask away!

I looked around and I did not see this. How do I detect fusions with this workflow? Is there a fastq.gz file generated where cell barcodes are assigned to reads?

https://github.com/Oshlack/JAFFA

The authors of JAFFA provide a script that matches cell barcodes with fusions. https://github.com/Oshlack/JAFFA/blob/master/scripts/get_cell_barcodes_by_fusion.bash

[nrhorner]

Hi @danhtruong

Fusion detection is currently not supported in this workflow. In the output folder there is file named *read_tags.tsv which contains columns read_id and corrected_barcode which might be useful to you.

[nrhorner]

Closed due to lack of response