Alignment without genes.gtf
Closed this issue · 1 comments
JuanruMaryGuo commented
Ask away!
Hi,
I would like to try the tools with some epigenome areas. Thus, my data might not lie around a gene. I would like to get the chr, start, and end points. Would it be a possible way to do this?
Thanks!
nrhorner commented
An annotation file is a required input. However, the output file read_tags.tsv
contains per-read info, and contains columns for 'chrand ,mapping
start` and 'end' positions.
I hope this answers your question.
Thanks