epi2me-labs/wf-single-cell

Isoform-level expression count matrix?

Opened this issue · 2 comments

sheetsvicky commented

Ask away!

Currently, *gene_expression.counts.tsv and *.expression.counts.tsv files are available in the output. I'm curious about how I can obtain the count matrix at the isoform level (chr.stringtie.xxxx). Are there any result files or additional tools that provide that information? Thank you!

eseffar commented

Same question here. That would be great to have a way to generate those files.

  • 👍2
cjw85 commented

We don't currently have a timeline for adding this, though we will consider it for the next major release.

  • 👍2