epiverse-trace/epidemics

Issues

• Develop model_default_odin() for compatibility with vignettes

  #254 opened a month ago by adamkucharski
  18

• Check additivity vs multiplicativity of interventions

  #255 opened 16 days ago by adamkucharski
  2

• Linking compiled {odin} code with {epidemics}

  #223 opened 23 days ago by pratikunterwegs
  2

• Default model with odin-backend example

  #222 opened 7 months ago by pratikunterwegs
  17

• Inaccuracy in Fig 1 caption for modelling_multiple_interventions.Rmd

  #253 opened 2 months ago by adamkucharski
  0

• Incorrect equations in Vacamole vignette

  #252 opened 4 months ago by sdwfrost
  0

• Vaccination rate misspecified in vignette?

  #251 opened 4 months ago by adamkucharski
  0

• Correct contact matrix processing?

  #248 opened 4 months ago by pratikunterwegs
  5

• Mismatch between intervention intensity and expectation for given R0?

  #250 opened 4 months ago by adamkucharski
  2

• Add basic SIR model

  #238 opened 6 months ago by adamkucharski
  2

• Possible scenario comparison functionality

  #221 opened 5 months ago by pratikunterwegs
  3

• Release epidemics 0.4.0

  #242 opened 5 months ago by pratikunterwegs
  0

• Add vignette for combined vacccination and intervention scenarios

  #194 opened 6 months ago by pratikunterwegs
  1

• Document how to make simple, developer-side model edits

  #193 opened 6 months ago by pratikunterwegs
  4

• Export internal model functions

  #168 opened 10 months ago by pratikunterwegs
  4

• Feedback on diphtheria/camps model

  #231 opened 6 months ago by pratikunterwegs
  0

• Vaccination counts lead to negative susceptibles

  #226 opened 6 months ago by pratikunterwegs
  1

• Second attempt at C++ implementation of Ebola model

  #179 opened 6 months ago by pratikunterwegs
  1

• Allow `population` to be a list-like in epidemic models

  #181 opened 9 months ago by pratikunterwegs
  1

• Update output helper functions for nested data.tables?

  #182 opened 6 months ago by pratikunterwegs
  1

• Improve input checking and cross-checking

  #191 opened 6 months ago by pratikunterwegs
  2

• Potential discrepancy in epidemic sizes

  #208 opened 6 months ago by pratikunterwegs
  2

• Allow time-varying, age-specific vaccination rates

  #227 opened 7 months ago by pratikunterwegs
  1

• Reconsider two-stage vaccination for Vacamole

  #229 opened 6 months ago by pratikunterwegs
  0

• Consider allowing reinfections in models

  #228 opened 6 months ago by pratikunterwegs
  0

• new infections curve is interrupted when using vaccination

  #224 opened 7 months ago by avallecam
  3

• Release epidemics 0.3.0

  #216 opened 7 months ago by pratikunterwegs
  1

• Possible API for models

  #160 opened 7 months ago by TimTaylor
  25

• Reconsider R implementations of ODE models

  #162 opened 7 months ago by pratikunterwegs
  4

• Remove Not Published from repo description?

  #215 opened 7 months ago by joshwlambert
  1

• Enhance `epidemic_size()`

  #190 opened 7 months ago by pratikunterwegs
  0

• Show better seed management in Ebola vignette

  #163 opened 7 months ago by pratikunterwegs
  0

• Show multiple replicates for Ebola intervention scenarios

  #164 opened 7 months ago by pratikunterwegs
  0

• Stochastic Ebola model should allow replicates

  #174 opened 7 months ago by pratikunterwegs
  0

• Preserve seeds across parameter and event sets for stochastic models

  #172 opened 7 months ago by pratikunterwegs
  0

• Stochastic Ebola model should have a two level structure

  #173 opened 7 months ago by pratikunterwegs
  0

• Stochastic model should accept list of model component sets

  #170 opened 7 months ago by pratikunterwegs
  0

• Stochastic model functions should accept parameter vectors

  #169 opened 7 months ago by pratikunterwegs
  0

• Add a continuous benchmarking workflow

  #184 opened 8 months ago by pratikunterwegs
  3

• Dynamic updating of vaccination rate

  #198 opened 8 months ago by pratikunterwegs
  0

• Rename transmissibility to transmission rate

  #186 opened 8 months ago by pratikunterwegs
  0

• Fix URL for pkgdown website

  #192 opened 8 months ago by pratikunterwegs
  0

• Check effect of multiple interventions

  #187 opened 8 months ago by pratikunterwegs
  4

• Test suites for vectorised ODE model

  #178 opened 8 months ago by pratikunterwegs
  0

• Add vignette showing ODE model vectorisation

  #183 opened 8 months ago by pratikunterwegs
  0

• ODE model functions should accept list of model component sets

  #167 opened 8 months ago by pratikunterwegs
  0

• Refactor argument checker functions to cross-checking only

  #175 opened 8 months ago by pratikunterwegs
  0

• Return simplified data.frame for scalar inputs

  #177 opened 8 months ago by pratikunterwegs
  0

• ODE model functions should accept vectors of infection parameters

  #166 opened 8 months ago by pratikunterwegs
  0

• Access intervention names

  #189 opened 9 months ago by pratikunterwegs
  0