Pinned Repositories
Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
Benchmark-Models
A collection of ODE models with experimental data as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
de_analysis
Distribution-free differential expression analysis for multi-patients-groups for scRNA-seq data
test_bootcamp2019
pyPESTO
python Parameter EStimation TOolbox
czi2codex
Convert czi files to Codex-Input format
libpetab-python
Python package for working with PEtab files
PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
scanpy
Single-cell analysis in Python. Scales to >1M cells.
dfba_tests
erikadudki's Repositories
erikadudki/Benchmark-Models
A collection of ODE models with experimental data as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
erikadudki/de_analysis
Distribution-free differential expression analysis for multi-patients-groups for scRNA-seq data
erikadudki/test_bootcamp2019