The goal of HatcheryPedAgree is to automate the process of running SNPPIT on large multi-generational hatchery data sets, and compare the results of different runs, especially between runs that use meta data (like sex and spawn date) and those that don’t.
Within R, make sure you have the ‘remotes’ package and then do:
remotes::install_github("eriqande/HatcheryPedAgree")Look in the too_big_vignettes directory for some examples.