eyzhao/hrdetect-pipeline

missing the most important scripts

Closed this issue · 3 comments

0x1orz commented

Thanks for your works .
when I read the file hrdetect-pipeline\Snakefile , I fond that the most important scripts /scripts/hrdetect/hrdetect_input_table.R and /scripts/hrdetect/compute_hrdetect.R were missing.

Could you share these ?

eyzhao commented

Apologies for the oversight. These scripts are now part of the repo via commit 100c662

  • 👍1
0x1orz commented

Thanks. And I am studying your paper about this pipeline. But I have no access to the data, the supplementary files of the paper. Could you share these important files or the testing sets for this pipeline?
BTW, my email is iwuchu@126.com. THX ,again.

eyzhao commented

Yes, this was a known issue that Supplementary Information was not linked at the time of publication. Clinical Cancer Research has not corrected this issue, and you can find the PDF under the "Figures and Data" tab of the online version of the paper.

Here is a direct link to the supplementary information: http://clincancerres.aacrjournals.org/highwire/filestream/160228/field_highwire_adjunct_files/0/185837_2_supp_4280021_9wj959.pdf