Pinned Repositories
BERT-Relation-Extraction
PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper
cgm-remote-monitor
nightscout web monitor
DrugLinker
Simple exact-matching algorithm to standardise drug names appearing on the DrugBank open-access repository
ggj2019
meshrdf
Code and documentation for the release of MeSH in RDF format
MIMIC_Extract
MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
nervaluate
Full named-entity (i.e., not tag/token) evaluation metrics based on SemEval’13
non_overlapping_objects_3d
Script written using Mathematica for random placement of non-overlapping 3d objects in a finite space
PKDocClassifier
Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo
PKNER
fgh95's Repositories
fgh95/DrugLinker
Simple exact-matching algorithm to standardise drug names appearing on the DrugBank open-access repository
fgh95/BERT-Relation-Extraction
PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper
fgh95/cgm-remote-monitor
nightscout web monitor
fgh95/ggj2019
fgh95/meshrdf
Code and documentation for the release of MeSH in RDF format
fgh95/MIMIC_Extract
MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
fgh95/nervaluate
Full named-entity (i.e., not tag/token) evaluation metrics based on SemEval’13
fgh95/non_overlapping_objects_3d
Script written using Mathematica for random placement of non-overlapping 3d objects in a finite space
fgh95/optuna
A hyperparameter optimization framework
fgh95/topic-example
fgh95/pktensors
fgh95/Pubmed-Pipeline
A library that facilitates the process of building a machine learning pipeline using PubMed as a data source
fgh95/pubmed_parser
:clipboard: Python XML parser for PubMed Open Access subset and MEDLINE dataset
fgh95/PyperGrabber
Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.
fgh95/react-native-app-clip-example
Minimal Appclip made with React Native
fgh95/recurrent-neural-networks
Learning about and doing projects with recurrent neural networks
fgh95/scispacy
A full spaCy pipeline and models for scientific/biomedical documents.
fgh95/sepsis3-mimic
Evaluation of the Sepsis-3 guidelines in MIMIC-III
fgh95/shields
Concise, consistent, and legible badges in SVG and raster format
fgh95/shiny-server
My personal Shiny server
fgh95/spark
Apache Spark
fgh95/specter
SPECTER: Document-level Representation Learning using Citation-informed Transformers
fgh95/TableDisentangler
Functional and structural analysis of tables in research papers (Table disentangling)
fgh95/the-turing-way
Host repository for The Turing Way: a how to guide for reproducible data science
fgh95/tidypmc
Parse full text XML documents from Pubmed Central
fgh95/transformers
🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.
fgh95/twitter_tensors