Pinned Repositories
AnalyzeSkeleton
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
Auto_Threshold
bUnwarpJ
ImageJ/Fiji plugin for consistent elastic registration of 2D images
Colocalisation_Analysis
Fiji's plugin for colocalization analysis
cookbook
Plugins collated for the Fiji Cookbook
fiji
A "batteries-included" distribution of ImageJ :battery:
fiji.github.io
Fiji website
SPIM_Registration
Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
Stitching
Fiji's Stitching plugins reconstruct big images from tiled input images.
Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes
Fiji's Repositories
fiji/AnalyzeSkeleton
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
fiji/SNT
Legacy project superseded by https://github.com/morphonets/SNT
fiji/Graph_Cut
fiji/Directionality
A Fiji plugin for inferring the main orientation of structures in an image.
fiji/FlowJ
Plugins from Biomedical Imaging in Java (BIJ)
fiji/Colour_Deconvolution
fiji/3D_Objects_Counter
fiji/Auto_Local_Threshold
fiji/BalloonSegmentation
fiji/Cell_Counter
fiji/Dichromacy
fiji/Color_Histogram
fiji/Color_Inspector_3D
fiji/java6-macosx
Fiji's version of Java 3D 1.5 (sans OpenJDK6) for Mac OS X
fiji/Anisotropic_Diffusion_2D
fiji/Archipelago_Plugins
fiji/Arrow
fiji/Bug_Submitter
fiji/Calculator_Plus
fiji/Cross_Fader
An ImageJ 1.x plugin that takes a two-slice stack and copies part of the second slice into the current one.
fiji/Fiji_Archipelago
fiji/Fiji_Package_Maker
fiji/Gray_Morphology
fiji/iterativedeconv
Mirror of Parallel Iterative Deconvolution project
fiji/JMathLib
Mirror of JMathLib project
fiji/learnathon-2018
Collection of material for the 2018 Learnathon
fiji/spectraldeconv
Mirror of Parallel Spectral Deconvolution project
fiji/TurboReg2
An adaptation of the ImageJ TurboReg plugin to ImageJ2 [UNMAINTAINED]
fiji/Yawi_2D
Mirror of Yawi2D project
fiji/Yawi_3D
Mirror of Yawi3D project