Speed-up removal of singletons
fmichonneau opened this issue · 1 comments
fmichonneau commented
From an rotl user, this takes a very long time:
tol<-read_newick_phylo(file='draftversion4.tre', simplify = TRUE)
Most likely because of the time it takes to recompute the tree each time a singleton is dropped. Is there a way to speed that part up?
fmichonneau commented
rewrote this part of the code in c++. Removing all the singletons from the full open tree takes about 5 hours on my laptop.