PRADA fusion runs

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Three aliquots failed their PRADA fusion runs due to low numbers of discordant read pairs (PRADA fusion module step 1) and thus low candidate reads for potential fusions. PRADA ends up breaking at fusion module step 5, Aligning Potential Junction reads to junction database due to no potential reads found. The four aliquots that failed are:

GLSS-LU-0B10-TP-01R-RNA-LNPBXB
GLSS-LU-00C4-R1-01R-RNA-O1YTL6
GLSS-MD-0027-TP-01R-RNA-9J243C

We will assume these aliquots have no fusion transcripts for now. However, we may drop them from the analysis later, as the lack of fusion transcripts detected could also be a technical artifact.

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Closing as the project has moved away from using these fusion calls.