how to read the dataset file

Question

caiquanyou opened this issue 4 years ago · 2 comments

@Jeff1995 Hi， I want to test the public dataset provided in https://cblast.gao-lab.org/download
but how to read the h5 file，I tried scanpy but failed

Thanks

Answer 1 · 2021-01-15T01:53:16.000Z

You can just use

dataset = cb.data.ExprDataSet.read_dataset("filename.h5")

See example here.