gao-lab/SLAT

A problem about the dataset in Tutorials.

Closed this issue · 5 comments

CocoGzh commented

Considering that the preprocessing method might lead to inconsistent results, could the author upload the h5ad file to the cloud storage?

xiachenrui commented

We had uploaded the processed .h5ad files of our tutorial to cloud drive. Please check https://slat.readthedocs.io/en/latest/tutorials/basic_usage.html.

CocoGzh commented

We had uploaded the processed .h5ad files of our tutorial to cloud drive. Please check https://slat.readthedocs.io/en/latest/tutorials/basic_usage.html.

Thank you! Is it possible for authors to upload all datasets in https://slat.readthedocs.io/en/latest/data.html to cloud?
Alternatively, could authors upload dataset in each typical application? For instance, consider the cross-technology cloud uploads described in this tutorial (https://slat.readthedocs.io/en/latest/tutorials/cross_technology.html).

xiachenrui commented

Ye. it is totally possible ! I plan to achieve this goal in the coming month.

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XiHuYan commented

Hi, these processed .h5ad files are available now?

xiachenrui commented

@CocoGzh @XiHuYan
Sorry for delay.
The processed h5ad files for

  1. xenium (link) and visium (link) in https://slat.readthedocs.io/en/latest/tutorials/cross_technology.html
  2. E11.5 mouse embryo stereo-seq dataset (link) and E12.5 mouse embryo stereo-seq dataset (link) in https://slat.readthedocs.io/en/latest/tutorials/times_series.html

were uploaded.