gao-lab/SLAT

Request for Additional Preprocessed Datasets

Closed this issue · 7 comments

wrab12 commented

Excellent work! I noticed that in your tutorial available at [https://slat.readthedocs.io/en/latest/tutorials/basic_usage.html], you provided two preprocessed datasets. Could you please provide additional preprocessed datasets?
Thank you for your assistance.

xiachenrui commented

Sure, which dataset do you want ?

bbchond commented

Sure, which dataset do you want ?

Hi, @xiachenrui, Sorry that I am confused about the preprocessing of the Spatial-ATAC-seq and Stereo-seq data used in the multimodal alignment (Section 'Matching heterogeneous datasets across distinct technologies and modalities') of your paper. Could you please provide the processed data?

I would greatly appreciate any help you can provide, and thank you in advance for your time and assistance.

xiachenrui commented

Sure, please leave your email adress and I will send them to you.

bbchond commented

Sure, please leave your email adress and I will send them to you.

Thank you very much for your reply, and my email address is: yuwangxdu@163.com.

DHUXU commented

Hi, @xiachenrui ,I am also very confused about the preprocessing of the Spatial-ATAC-seq and Stereo-seq data used in the multimodal alignment mentioned above. Could you please also send me a copy of the processed data? My email address is 18879446585@163.com. If you could send the data to me, I would be extremely grateful.

ouweihao commented

Hi, @xiachenrui, I has noticed that there exits some preprocessed DLPFC data in this project, Could you please send my these data or just tell me how to process this data. My email address is owenfate@gmail.com. I appreciate your time and any help you can offer.

xiachenrui commented

Hi, @xiachenrui, I has noticed that there exits some preprocessed DLPFC data in this project, Could you please send my these data or just tell me how to process this data. My email address is owenfate@gmail.com. I appreciate your time and any help you can offer.

Hi @ouweihao,

Thanks for your interests ! Our paper and GitHub repo contain the URL of the original data and notbooks which record detailed data preprocessing step , so you can easily repeat my preprocessing process. Given the volume of the spatial omics data, I cannot easily share the them via GitHub or e-mail directly.

Best.