Issues with running example file: CPU does not support SSSE3
HitMonk opened this issue · 1 comments
HitMonk commented
Hello all,
I just installed ProtHint and was running it with the example file but came across this error. Is there something I can do to fix this? I have never seen an error like this before. Any advice is appreciated :)
$ ../bin/prothint.py input/genome.fasta input/proteins.fasta --geneSeeds input/genemark.gtf --workdir test
ProtHint Version 2.6.0
Copyright 2019, Georgia Institute of Technology, USA
Please cite
- ProtHint: https://doi.org/10.1093/nargab/lqaa026
- DIAMOND: https://doi.org/10.1038/nmeth.3176
- Spaln: https://doi.org/10.1093/bioinformatics/btn460
Called from: /exports/watson/Prateek/apps/ProtHint/example
Cmd: ../bin/prothint.py input/genome.fasta input/proteins.fasta --geneSeeds input/genemark.gtf --workdir test
[Thu Jul 7 18:34:17 2022] Pre-processing protein input
[Thu Jul 7 18:34:17 2022] Skipping GeneMark-ES, using the supplied gene seeds file instead
[Thu Jul 7 18:34:17 2022] Translating gene seeds to proteins
[Thu Jul 7 18:34:18 2022] Translation of seeds finished
[Thu Jul 7 18:34:18 2022] Running DIAMOND
Error: CPU does not support SSSE3. Please compile the software from source.
[Thu Jul 7 18:34:18 2022] error: ProtHint exited due to an error in command: /exports/watson/Prateek/apps/ProtHint/bin/../dependencies/diamond makedb --in /exports/watson/Prateek/apps/ProtHint/example/test/protc91ihvk8 -d diamond_db --threads 40
HitMonk commented
Huh, i seemed to have fixed it by simply deleting the diamond executable that came with the program. It defaulted to the one on my path. Thank you. Ill close the issue.