gatech-genemark/ProtHint

Issues with running example file: CPU does not support SSSE3

HitMonk opened this issue · 1 comments

Hello all,
I just installed ProtHint and was running it with the example file but came across this error. Is there something I can do to fix this? I have never seen an error like this before. Any advice is appreciated :)

$ ../bin/prothint.py input/genome.fasta input/proteins.fasta --geneSeeds input/genemark.gtf --workdir test
ProtHint Version 2.6.0
Copyright 2019, Georgia Institute of Technology, USA

Please cite
  - ProtHint: https://doi.org/10.1093/nargab/lqaa026
  - DIAMOND:  https://doi.org/10.1038/nmeth.3176
  - Spaln:    https://doi.org/10.1093/bioinformatics/btn460

Called from: /exports/watson/Prateek/apps/ProtHint/example
Cmd: ../bin/prothint.py input/genome.fasta input/proteins.fasta --geneSeeds input/genemark.gtf --workdir test

[Thu Jul  7 18:34:17 2022] Pre-processing protein input
[Thu Jul  7 18:34:17 2022] Skipping GeneMark-ES, using the supplied gene seeds file instead
[Thu Jul  7 18:34:17 2022] Translating gene seeds to proteins
[Thu Jul  7 18:34:18 2022] Translation of seeds finished
[Thu Jul  7 18:34:18 2022] Running DIAMOND
Error: CPU does not support SSSE3. Please compile the software from source.
[Thu Jul  7 18:34:18 2022] error: ProtHint exited due to an error in command: /exports/watson/Prateek/apps/ProtHint/bin/../dependencies/diamond makedb --in /exports/watson/Prateek/apps/ProtHint/example/test/protc91ihvk8 -d diamond_db --threads 40

Huh, i seemed to have fixed it by simply deleting the diamond executable that came with the program. It defaulted to the one on my path. Thank you. Ill close the issue.