Question: mouse reference docs?

[bkellman]

Hi,

Just curious, I'm new to variant calling and I'm not so familiar with some of the references (e.g. vcfindicies) or the specific index preparation preferred by GATK. The pipeline is extremely useful but it only points to a reference for human genomes. Is there somewhere mouse genomes are stored?

Thank you

[bshifaw]

Hi bkellman,
We don't provide support for non-human studies but perhaps you may get an answer from the gatk community by posting in the zoo and garden forum page.