gawbul
Dad, husband, and PhD 👨🎓 Scientist 👨🔬 Technologist 📱 Engineer 👨💻 Bibliophile 📚 Philomath 🧐
Dr Stephen P. MossEarth
Pinned Repositories
docker-bio-linux8
Dockerfile for Bio-Linux 8
docker-sge
Dockerfile to build a container with SGE installed
fastq_rnd_seek
Randomly sample from a FASTQ file without loading the whole file into memory
fish_introns
A comparison of intron characteristics across fish species available in Ensembl
gawbul.github.io
Homepage of Dr Stephen P. Moss, Computational Scientist
gcat
Genome Comparison and Analysis Toolkit
goensemblrest
A client for the Ensembl REST API written in the Go programming language
pathlength
PathLength implements a ray tracing model to calculate resolution and sensitivity in reflective superposition compound eyes.
pyEnsemblRest
A client for the Ensembl REST API written in the Python programming language
tweet_aggregator
A tweet aggregator using the Python Twython package and Twitter API. Used to archive tweets from recent twitter hashtag conversations.
gawbul's Repositories
gawbul/pyEnsemblRest
A client for the Ensembl REST API written in the Python programming language
gawbul/pathlength
PathLength implements a ray tracing model to calculate resolution and sensitivity in reflective superposition compound eyes.
gawbul/fastq_rnd_seek
Randomly sample from a FASTQ file without loading the whole file into memory
gawbul/gawbul.github.io
Homepage of Dr Stephen P. Moss, Computational Scientist
gawbul/pyston-kapitan
Kapitan running on Pyston
gawbul/vertex-pipelines-end-to-end-samples
gawbul/fish_introns
A comparison of intron characteristics across fish species available in Ensembl
gawbul/goensemblrest
A client for the Ensembl REST API written in the Go programming language
gawbul/amazon-genomics-cli
gawbul/aws-cli
Universal Command Line Interface for Amazon Web Services
gawbul/aws-sdk-go
AWS SDK for the Go programming language.
gawbul/build-bio-linux
Various scripts and supporting files used in building the Bio-Linux ISO
gawbul/CloudSPAN-handbook
CloudSPAN Handbook
gawbul/contributing-guide
pyOpenSci's guidebook for package authors, reviewers, and editors
gawbul/gawbul
My special repository
gawbul/gitignore
A collection of useful .gitignore templates
gawbul/homebrew
The missing package manager for OS X.
gawbul/homebrew-core
🍻 Default formulae for the missing package manager for macOS
gawbul/httpie
CLI HTTP client, user-friendly curl replacement with intuitive UI, JSON support, syntax highlighting, wget-like downloads, extensions, etc.
gawbul/ioq3
The ioquake3 community effort to continue supporting/developing id's Quake III Arena
gawbul/kitchen-docker
A Test Kitchen Driver for Docker
gawbul/ncov-ingest
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
gawbul/OpenOmics
A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.
gawbul/OSXDefaults
A centralized place for the awesome work started by @mathiasbynens on .osx
gawbul/prometheus
The Prometheus monitoring system and time series database.
gawbul/sci-hub-injector
Adds SciHub links to popular publisher websites
gawbul/spksrc
Cross compilation framework to create native packages for the Synology's NAS
gawbul/swizzin
A simple, modular seedbox solution
gawbul/terraform
Terraform is a tool for building, changing, and combining infrastructure safely and efficiently.
gawbul/vagrant-reprophylo
Vagrant-based ReproPhylo