gdevenyi
Research Computing Associate at Cerebral Imaging Centre, Douglas Mental Health University Institute, McGill University
Cerebral Imaging Center, Douglas Mental Health University Institute, @CobraLab Montreal, Quebec, Canada
Pinned Repositories
abagen
A toolbox for working with Allen Human Brain Atlas microarray expression data
AllenHumanGeneMNI
Careful multispectral registration of the Allen Human Brain Gene Samples in MNI ICBM NLIN SYM 09c space
ansible_aggregate_facts
curriculumvitae
Source Files and latest version of my curriculum vitae
lattice_matcher
Software for calculating epitaxial lattice matches considering symmetries of different crystal systems
lozano_ansible
mcmaster.latex
LaTeX Template Satisfying McMaster Thesis Formatting Requirements
NeuroAnsible
An ansible playbook to deploy a complete standalone neuroimaging workstation
phd_thesis
My PhD Thesis in LaTeX and all associated files
uvccapture
uvccapture: USB UVC Video Class Snapshot Software
gdevenyi's Repositories
gdevenyi/lattice_matcher
Software for calculating epitaxial lattice matches considering symmetries of different crystal systems
gdevenyi/bash3boilerplate
Templates to write better Bash scripts
gdevenyi/BEaST
C implementation of Brain Extraction based on nonlocal Segmentation Technique
gdevenyi/bic-pipelines
Brain Imaging Center Image Processing Pipelines
gdevenyi/bicpl
BICPL: The Brain Imaging Centre Programming Library
gdevenyi/bpipe
Bpipe - a tool for running and managing bioinformatics pipelines
gdevenyi/build_packages
Automatically build minc-toolkit&Co packages using Docker
gdevenyi/collaborative-lesson-development
10 Simple Rules paper on collaborative lesson development
gdevenyi/collaborative-lesson-development-1
10 Simple Rules paper on collaborative lesson development Edit Add topics
gdevenyi/DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals, including humans
gdevenyi/disptools
Generate displacement fields with known volume changes
gdevenyi/docker-cpu-miner
gdevenyi/EZminc
MRI image processing toolkit, main io library is now integrated into main MINC distribution at https://github.com/BIC-MNI/minc
gdevenyi/global2018
Montreal Site of Brainhack Global 2018
gdevenyi/habenula_segmentation
Human Habenula Segmentation
gdevenyi/ILT
ILT -- Image Layout Toolkit
gdevenyi/libminc
libminc is the core library and API of the MINC toolkit
gdevenyi/minc-stuffs
Scripts and bits of code for minc files.
gdevenyi/minc-toolkit
Metaproject uniting all the available minc tools
gdevenyi/minc-toolkit-containers
Making containers with minc-toolkit
gdevenyi/minc2-simple
simplified MINC2 API
gdevenyi/mincfft
FFT's via FFTW for minc
gdevenyi/mni-perllib
MNI MINC perllib (not used much anymore)
gdevenyi/mni_autoreg
MINC mni_autoreg
gdevenyi/nifti_clib
C libraries for NIFTI support
gdevenyi/oneplus3
GPL source code to Caesium kernel for OnePlus 3/3T
gdevenyi/sanoid
Policy-driven snapshot management and replication tools. Using ZFS for underlying next-gen storage. (Btrfs support plans are shelved unless and until btrfs becomes reliable.) Primarily intended for Linux, but BSD use is supported and reasonably frequently tested.
gdevenyi/shell-novice
Software Carpentry introduction to the shell for novices.
gdevenyi/SmoothingRecursiveYvvGaussianFilter
External module for ITK v4 implementing the Young & Van Vliet recursive gaussian smoothing filter.
gdevenyi/volregrid
regrid MINC volumes arbitrarily