genxnetwork/grape

InputFunctionException in rule merge_ersa

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GAMariaF commented

Hi,

thank you for sharing an interesting pipeline!

After running the preprocessing workflow and trying to run the relationship inference with IBIS + ERSA & KING I get the error message below. It looks like the rule ersa is never run and the missing input is causing problems for rule merge_ersa. It was run using docker and set up as described in the README. Do you know what causes it and how it can be fixed?

Best

Maria

InputFunctionException in rule merge_ersa in file /src/repo/workflows/find/../../rules/relatives_ibis_king.smk, line 132:
Error:
AttributeError: 'Wildcards' object has no attribute 'id'
Wildcards:

Traceback:
File "/src/repo/workflows/find/../../rules/relatives_ibis_king.smk", line 128, in aggregate_input

GAMariaF commented

However the docker is working fine: https://hub.docker.com/r/genxnetwork/grape/tags.

I will just use that instead. No need to answer :)

Maria

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