Reference files downloading failure in ref/1000genome/bcf

[Jahysama]

The reference downloading command from readme.md needs additional --phase flag for all bcf chromosomes files to be downloaded.

docker run --rm --privileged -it -v /media:/media -v /etc/localtime:/etc/localtime:ro genx_relatives:latest \
launcher.py reference  --ref-directory /media/ref --phase

However this leads to "NameError in line 82 of /src/repo/workflows/reference/Snakefile:name 'HD_GENOTYPE_CHIP' is not defined" error arise. To fix this, 82nd line in workflows/reference/Snakefile should be deleted.

82            hd_genotype_chip = HD_GENOTYPE_CHIP,