gexijin/idepGolem

Issues

• Nothing in Pathway/Significant pathways, but something in Tree, Network and Heatmap

  #542 opened a year ago
  0

• download the TPM value

  #541 opened a year ago
  0

• error message in PCA tab for multiple factors

  #540 opened a year ago
  2

• label top top genes and option of the interactive heatmap

  #539 opened a year ago
  0

• Complete the report in Pre-Process tab

  #538 opened 10 months ago
  2

• Add gene labels on Scatter plot under DEG2 tab

  #537 opened a year ago
  1

• Add line graphs for k-means clustering (time course data)

  #536 opened a year ago
  1

• "Do not convert gene IDs" option is not suitable for STRINGdb species

  #535 opened a year ago
  0

• Example gene IDs function is expected

  #534 opened a year ago
  0

• upload data and show data in original order

  #533 opened a year ago
  1

• List the file name after uploading

  #532 opened a year ago
  0

• Add download options for Pathway/Significant pathway, Tree, Network, KEGG

  #531 opened 10 months ago
  2

• Remove the information about PREDA

  #529 opened a year ago
  2

• Add sample names for the heatmaps

  #528 opened 10 months ago
  1

• network and table download are needed for tab Network

  #526 opened a year ago
  2

• Tree plot with blue color for up and red color for down regulation

  #525 opened a year ago
  1

• color for network in pathway are confused

  #524 opened a year ago
  1

• cluster change automatically in Clustering/Plot, Genes

  #523 opened a year ago
  0

• Comparison of two levels of one factor under the condition of one level of another factor

  #521 opened a year ago
  0

• no gene name for network plot

  #520 opened a year ago
  0

• sample name started with number causes error

  #519 opened a year ago
  0

• interaction cause error in demo data

  #518 opened a year ago
  0

• Add normalized value demo data and FDR & Fold Change demo data

  #517 opened 10 months ago
  1

• Error message when upload one factor experiment design file

  #516 opened a year ago
  0

• FDR and adjP value file with lots of missing values won't work in idep1.1

  #515 opened a year ago
  0

• design file uploading error

  #514 opened a year ago
  0

• Add sample names to interactive PCA plot

  #493 opened a year ago
  1

• Add QC metrics for ribosomal RNA, mitochondria from counts

  #491 opened a year ago
  1

• Cannot download Human.db from ensmbl in Docker

  #490 opened a year ago
  16

• Pathway "Generate Report" Fails

  #487 opened a year ago
  2

• upload the source tables of the 20 main species

  #486 opened a year ago
  0

• Download database for Human stops

  #485 opened a year ago
  1

• Improve pathway analysis using original expression data instead of foldchange.

  #481 opened a year ago
  0

• Excel files as an input files

  #480 opened a year ago
  2

• Gene Symbols on Volcano Plot

  #479 opened a year ago
  3

• Add ChatGPT for Q&A

  #478 opened a year ago
  0

• Enable customization of heatmaps

  #477 opened 2 years ago
  0

• Add significance levels to gene plots and total read counts plot

  #476 opened 2 years ago
  0

• Error on interactive heatmap when left along for a few minutes

  #472 opened 2 years ago
  0

• Check most recent version of iDEP when users start the app locally

  #471 opened 2 years ago
  0

• Slow initial loading 30 seconds

  #469 opened 2 years ago
  1

• Pathway Report Generation Fails

  #452 opened 2 years ago
  2

• Some Graphs Don't Support Large Number of Samples or Long Names

  #451 opened 2 years ago
  1

• State save and sample filtering

  #450 opened 2 years ago
  0

• Add gitters to gene plot

  #447 opened a year ago
  4

• DEG Venn Diagram Fails to Render

  #445 opened 2 years ago
  1

• Experimental Design Single Levels

  #444 opened a year ago
  2

• Download of enrichment data doesn't group genes in correct pathways

  #443 opened 2 years ago
  0

• Error in file(file, "rt") : cannot open the connection

  #439 opened 2 years ago
  16

• convert_id - needs review comment

  #438 opened 2 years ago
  0