gfinak

Computational biologist working in the vaccine space.

Ozette TechnologiesSeattle

Pinned Repositories

BioC2015OpenCyto
BioC 2015 OpenCyto workshop R package
Language:HTML10
containerit
Package an R workspace and all dependencies as a Docker container
Language:R1 1 00
OpenCytoTutorial
A tutorial on installing and using OpenCyto
Language:CSS40
Talks
HTML slides for various talks.
Language:JavaScript32
COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells
Language:R6 7 6811
flowCore
Core flow cytometry infrastructure
Language:R43 14 24025
flowWorkspace
flowWorkspace
Language:R44 15 38021
MAST
Tools and methods for analysis of single cell assay data in R
Language:R224 10 17757
openCyto
A package that provides data analysis pipeline for flow cytometry.
Language:R75 24 23729
DataPackageR
An R package to enable reproducible data processing, packaging and sharing.
Language:R153 19 8019

gfinak's Repositories

gfinak/OpenCytoTutorial
A tutorial on installing and using OpenCyto
Language:CSS40
gfinak/Talks
HTML slides for various talks.
Language:JavaScript32
gfinak/BioC2015OpenCyto
BioC 2015 OpenCyto workshop R package
Language:HTML10
gfinak/containerit
Package an R workspace and all dependencies as a Docker container
Language:R1 1 00
gfinak/Cytotrol
Language:R1 2 0
gfinak/faust_nextflow
Language:Nextflow1
gfinak/MIMOSA_manuscript
The MIMSA manuscript with reproducible code.
Language:R1
gfinak/TidyCars
A data package demonstrating the use of rOpenSci/DataPackageR
Language:R11
gfinak/abstar
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
Language:Python
gfinak/courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
Language:HTML
gfinak/Cytometry_PreGating
gfinak/cytoRSuite
Compensation, Gating & Visualisation Toolkit for Analysis of Flow Cytometry Data
Language:R
gfinak/flowClean
Language:R
gfinak/FOCISMeeting
Language:JavaScript1 0
gfinak/GFMisc
Doesn't everyone have a 'Misc' package these days?
Language:R1 0
gfinak/hexSticker
:sparkles:Hexagon sticker in R
Language:R
gfinak/hugo-academic
The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:
Language:HTML
gfinak/improvedMindensity
R routine to perform 1D gating of flow cytometry data
Language:R
gfinak/LyoplateStandardizationCyto2014
Presentation on the Lyoplate Gating Standardization Project
Language:CSS
gfinak/maker
Makefile for R packages
gfinak/Multicore-TSNE
Parallel t-SNE implementation with Python and Torch wrappers.
Language:C++
gfinak/rcpp-gallery
Source code for the Rcpp Gallery website
Language:C++
gfinak/RcppNumerical
Rcpp Integration for Numerical Computing Libraries
Language:C++
gfinak/roweb2
rOpenSci website
Language:HTML
gfinak/swift
Access Fred Hutch OpenStack swift object store
Language:R