release 2 features

[gianthk]

• README.md
  • Install instructions
  • provide environment files for integration with ASTRA and TomoPy
  • gif video
  • cluster integration
  • gspread integration
    • requirements
    • link video on how to setup Google API
• expert settings
• check for imagej exe path
• submit to cluster button
  • write slurm job
  • submit slurm job to rum cluster
  • log recon parameters to gspread master
  • sino range enable
  • cluster integration comment slurm.py
• implement dxchange.reader.readbeats
• write recon midplanes (test pending)
  • alrecon
  • BEATS_recon.py
• ring-artefact correction
  • remove stripes (sinogram space)
  • remove stripes in BEATS_recon.py
• extended FOV clipping (360 to 180deg sino)
• oauth2client deprecated
• absolute settings path
• log to gspread option
• attempt gpsread load keys
• import touint from recon_utils
• free all processed data at new H5 file load
• directory autocompletion ('recon', 'cor') based on experiment dir and dataset name
• delegate logging
• deactivate napari viewers if napari not installed
• deactivate napari viewers if alrecon is launched as local host app
• move gspread key path to local config file
• launch pages within jupyter notebook
• MultiPage with Settings page
• config and user_config YAML files
• Recon with different algorithms
• phase-retrieval
• Dataset info using reactive input
  • projs size
• circular mask
• 16-bit option
• data range for write
• proj range
• COR range slider
• COR slice input
• COR guess button
• Recon
• write recon to disk
• Napari viewer
  • projs
  • recon
• disable buttons:
  • Load if h5 file not selected
  • COR if data not loaded
  • Recon if data not loaded
  • write recon if data not reconstructed
  • napari proj if data not loaded
  • napari recon if data not reconstructed
• this al-recon instance has reconstructed N datasets