giovannipizzi/seekpath

Problem creating primitive cell

syeomvols opened this issue · 1 comments

Hi,

I'm using seekpath python library 2.0.1, and I found the following error occurs for this attached specific geometry file.

ValueError: Problem creating primitive cell, I found the following group of atoms with len != 2: (2, 6, 12, 16), (3, 7, 13, 17), (4, 8, 14, 18), (5, 9, 15, 19)

I found the structure can be normalized or primitivized using spglib 1.16.3.

I also checked this geometry doesn't work in https://www.materialscloud.org/work/tools/seekpath

Thank you.

PdSe1.23Te0.77.vasp.txt

I found there were overlapped atoms in the geometry file. Closing this issue.