Error: no slot of name "alignementj" for this object of class "GenomicAlignmentTrack"
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genec1 commented
When I try to display a bam alignment track, I get the following error:
Error in sprintf(" writing bam file of size %d to %s", length(track@alignementj), :
no slot of name "alignementj" for this object of class "GenomicAlignmentTrack"
R/igvR.R is the only file in which "alignementj" appears. Examining the slot names for the GenomicAlignmentTrack object, the closest is "alignment". The temporary fix is to set igv@quiet to TRUE, causing this code block to be skipped.
paul-shannon commented
@genec1 typo fixed. Thank you for the bug report.