Pinned Repositories
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
biorxiv-sanity-preserver
Web interface for browsing, search and filtering recent biorxiv submissions
dietnet
Diet networks in TensorFlow
dnaconvnet-notebook
Jupyter notebook for the application of convolutional neural nets to toy DNA sequence data
fit_nbinom
Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B
neuralnet_countmodels
Count models with TensorFlow and Keras
opentargets-genetics-python
Python wrapper for the Open Targets Genetics GraphQL API
pyannotables
Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
pytelegram
Telegram Python bindings based on CFFI and vysheng's TGL
SparseMax.torch
Implementation attempt of "From Softmax to Sparsemax: A Sparse Model of Attention and Multi-Label Classification"
gokceneraslan's Repositories
gokceneraslan/magma-phenotype-similarity
gokceneraslan/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
gokceneraslan/anndata2ri
Convert between AnnData and SingleCellExperiment
gokceneraslan/biclustlib
A Python library of biclustering algorithms, evaluation measures and datasets.
gokceneraslan/cellphonedb
gokceneraslan/code
scripts
gokceneraslan/diffxpy
Differential expression analysis for single-cell RNA-seq data.
gokceneraslan/docs.targetvalidation.org
gokceneraslan/enstop
Ensemble topic modelling with pLSA
gokceneraslan/genetics-api
Open Targets Genetics GraphQL API
gokceneraslan/harmony-pytorch
gokceneraslan/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
gokceneraslan/kipoi-veff
Variant effect prediction plugin for Kipoi
gokceneraslan/ldlink-python
Python wrapper for the LDlink REST API
gokceneraslan/librfn
Rectified Factor Networks
gokceneraslan/librfn-python
Python wrapper for the RFN library.
gokceneraslan/outrigger
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
gokceneraslan/plotnine
A grammar of graphics for Python
gokceneraslan/pyfabia
Fabia Biclustering Algorithm in Cython
gokceneraslan/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
gokceneraslan/pytorch-lightning-bolts
PyTorch Lightning Bolts is a toolbox of models, callbacks, and datasets for AI/ML researchers.
gokceneraslan/r-color-palettes
Comprehensive list of color palettes available in r ❤️🧡💛💚💙💜
gokceneraslan/Sanity
Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
gokceneraslan/scPlot
Single cell interactive plotting tools
gokceneraslan/scVI
Deep generative modeling for single-cell omics data
gokceneraslan/seaborn
Statistical data visualization using matplotlib
gokceneraslan/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
gokceneraslan/snap-python
SNAP Python code, SWIG related files
gokceneraslan/souporcell
Clustering scRNAseq by genotypes
gokceneraslan/terra-docker