gokceneraslan's Stars
guidance-ai/guidance
A guidance language for controlling large language models.
snap-stanford/GraphGym
Platform for designing and evaluating Graph Neural Networks (GNN)
megvii-research/ML-GCN
PyTorch implementation of Multi-Label Image Recognition with Graph Convolutional Networks, CVPR 2019.
owkin/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
mamba-org/micromamba-docker
Rapid builds of small Conda-based containers using micromamba.
AIRI-Institute/GENA_LM
GENA-LM is a transformer masked language model trained on human DNA sequence.
jhkorhonen/MOODS
MOODS: Motif Occurrence Detection Suite
tstandley/taskgrouping
Code for Which Tasks Should Be Learned Together in Multi-task Learning?
chanzuckerberg/cellxgene-census
CZ CELLxGENE Discover Census
single-cell-data/SOMA
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
tanjimin/C.Origami
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
jmschrei/ledidi
Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
bernardo-de-almeida/DeepSTARR
Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Drosophila melanogaster S2 cells
johli/seqprop
Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
isl-org/LMRS
Source code for ICLR 2020 paper: "Learning to Guide Random Search"
autosome-ru/LegNet
accurate prediction of promoter activity and variant effects from massive parallel reporter assays
daifengwanglab/JAMIE
Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)
jmschrei/dragonnfruit
A method for analyzing scATAC-seq experiments.
JanZrimec/ExpressionGAN
scverse/genomic-features
Genomic Features in Python from BioConductor's AnnotationHub
caleblareau/mitoblacklist
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
DennisGankin/species-aware-DNA-LM
Species-aware DNA language modeling
SchulzLab/STARE
TF analysis from epigenetic and Hi-C data
Genentech/ringer
RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion
Mayrlab/scUTRquant
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
visze/sequence_cnn_models
BiocPy/MultiAssayExperiment
Container class to represent and manage multi-omics genomic experiments
Bayer-Group/open-nucleotides
Deep Learning Models Recognizing Genomic Regulatory Code
erikaznauryan/GSH-1
elvirakinzina/GSH