gtollefson

Pinned Repositories

• Proteinarium

  Language:Java6200

• miplicorn

  A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.

  Language:R39322

• nano_mamp_pipes

  NanoMAMP Pipes is a free-to-use one-step automated pipeline designed for comprehensive analysis of molecular inversion probe and amplicon sequencing data from Nanopore platforms.

  Language:Shell0700

• VariantVisualization.jl

  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

  Language:Julia8527013

• cnvkit

  Copy number variant detection from targeted DNA sequencing

  Language:Python54331758165

• bailey_lab_analyses

  Language:R0000

• gt_omics_analysis_toolkit

  A growing collection of custom executables for bioinformatics analysis

  Language:R0000

• Clair3

  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

  Language:Python2331029427

• SeqVarTools

  An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis

  Language:R3463

• INDELfindR

  INDELfindR is an command line tool for detecting complex insertions and deletions (indels) from indexed BAM files.

  Language:R21110

gtollefson's Repositories