gui11aume

I am a scientist who loves biology and mathematics. I have a research team at the University of Toronto.

University of Toronto ScarboroughToronto

Pinned Repositories

blueflower
Language:Python2 4 01
cacheperf
Measure cache performance
Language:C2 3 00
cthoop
Cut The Hell Out Of Plasmids
Language:Python2 5 01
HMMt
R package for Hidden Markov Models with t emissions
Language:R7 4 38
mmp
MEM mapper prototype
Language:C13 5 111
oligoz
oligoz primer design
Language:Python3 3 00
pubcron
Cron watch of PubMed abstracts
Language:Python3 3 00
starcode
All pairs search and sequence clustering
Language:C91 8 4121
thegrandlocus
Language:Python3 4 00
vtrackR
Version tracking for R production scripts
Language:R3 5 20

gui11aume's Repositories

gui11aume/HMMt
R package for Hidden Markov Models with t emissions
Language:R7 4 38
gui11aume/cacheperf
Measure cache performance
Language:C2 3 00
gui11aume/genomearchitecturelab
Genome Architecture Lab
Language:Python2 5 01
gui11aume/Rscripts
R scripts for molecular biology
Language:R2 4 0
gui11aume/.vim
Vim dotfiles
Language:Vim Script1 3 0
gui11aume/analytic_combinatorics_seeding
Manuscript on the analytic combinatorics of seeding
Language:TeX1 3 0
gui11aume/blobexchange
Exchange files through HTTP
Language:Python1 3 0
gui11aume/drosochip
All out Droso Chip-seq scraper
Language:Python1 3 0
gui11aume/euchronism
Send messages in the future
Language:Python1
gui11aume/GRU
Gated Recurrent Unit
Language:Python1 4 0
gui11aume/Hi.C
Hi-C pipeline written in C
Language:C1 3 0
gui11aume/protocols
Laboratory protocols
1 4 0
gui11aume/3d-dna
3D de novo assembly (3D DNA) pipeline
Language:Shell3 0
gui11aume/ai_biaae
Bayesian Inference with Adversarial Autoencoder
Language:Python3 0
gui11aume/analytic_combinatorics_assembly
Manuscript on the analytic combinatorics of genome assembly
Language:TeX3 0
gui11aume/BHIVE_for_single_provirus_transcriptomics
B-HIVE for single virus transcriptomics
Language:R4 0
gui11aume/citeulike-t
Dataset citeulike-t for 'Collaborative Topic Regression with Social Regularization' (CTRSR)
2 0
gui11aume/CRISPR_screen
Information and scripts used for our CRISPR screen
Language:Python3 0
gui11aume/dryhic
Language:R3 0
gui11aume/epiyeast
Yeast epistasis pipeline
Language:Python3 0
gui11aume/fasta_extractor
Python script to extract sequences from fasta files
Language:Python3 0
gui11aume/gzopen
The famous gzopen
Language:Python3 0
gui11aume/Jurkat_barcode_diveristy
Effects of passages and freeze / thaw cycles in Jurkat cells on barcode diversity
Language:R2 0
gui11aume/learn_bwt_indexing
Learn Burrows-Wheeler indexing
Language:C3 0
gui11aume/liftover
Python module for lifting over from chain files
Language:Python
gui11aume/meCpG_analysis
Scripts to analyse meCpG deamination
Language:Python3 0
gui11aume/MEMonteCarlo
Monte Carlo simulations of reads in the extended MEM alphabet
Language:C3 0
gui11aume/OnTAD
An Optimal Nested TAD caller for Hi-C data
Language:C++2 0
gui11aume/tripeline
Language:Python5 0
gui11aume/ttest_lecture
A lecture I give on Student's t test
Language:PostScript3 0