Pinned Repositories
deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
align-clr-to-ccs
Align subreads to ccs reads
bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
cannoli
Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.
connector-sites
course-repo-example
course-repo-template
easy-course-webpage
gunjanbaid's Repositories
gunjanbaid/easy-course-webpage
gunjanbaid/adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
gunjanbaid/align-clr-to-ccs
Align subreads to ccs reads
gunjanbaid/bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
gunjanbaid/cannoli
Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.
gunjanbaid/connector-sites
gunjanbaid/course-repo-example
gunjanbaid/course-repo-template
gunjanbaid/gunjanbaid.github.io
gunjanbaid/datahub
JupyterHubs for use by Berkeley enrolled students
gunjanbaid/decal-lab
gunjanbaid/deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
gunjanbaid/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
gunjanbaid/distributed_pytorch
gunjanbaid/Genomics-DataScience
Class materials for LS 88-3 Genomics and Data Science
gunjanbaid/hg002-ccs
gunjanbaid/jupyter-widgets-demo
gunjanbaid/jupyterhub-tutorial
Tutorial materials for deploying JupyterHub
gunjanbaid/markdown-site-template
gunjanbaid/nucleus
Python and C++ code for reading and writing genomics data.
gunjanbaid/octopus
Bayesian haplotype-based mutation calling
gunjanbaid/ok
ok.py supports programming projects by running tests, tracking progress, and assisting in debugging.
gunjanbaid/OrbWeaver
A convolutional neural network for predicting chromatin accessibility in multiple cell types from DNA sequence
gunjanbaid/RAM
"Recurrent Models of Visual Attention" in TensorFlow
gunjanbaid/rllab
rllab is a framework for developing and evaluating reinforcement learning algorithms, fully compatible with OpenAI Gym.
gunjanbaid/test-ga
gunjanbaid/TRAPeS
TCR Reconstruction Algorithm for Paired-End Single cell
gunjanbaid/Undiagnosed-1
Patient Genomics Research Case
gunjanbaid/url-to-interact