harryjubb/arpeggio

s- command is not working

mariaangelesjs opened this issue · 1 comments

Hi Harry,

I was able to run arpeggio on my file with no issue, but now I can't select the ligand.
This is what's coming up:
docker run --rm -v c:/directory:/pdbfile -it arpeggio python arpeggio.py /pdbfile s- '/E/999[LI2]/' v-
usage: arpeggio.py [-h] [-s SELECTION [SELECTION ...] | -sf SELECTION_FILE]
[-wh] [-mh] [-ms MINIMISATION_STEPS]
[-mf {MMFF94,UFF,Ghemical}]
[-mm {DistanceGeometry,SteepestDescent,ConjugateGradients}]
[-co VDW_COMP] [-i INTERACTING] [-ph PH] [-sa] [-a] [-he]
[-op OUTPUT_POSTFIX] [-v]
pdb
arpeggio.py: error: unrecognized arguments: s- /E/999[LI2]/ v-

I tried also with RESNAME:999 and had the same issue.
Reminder: I'm working with Windows.
Kind regards,
Maria

Update: now working. I've just seen that I was writing s- instead of -s.
Kind regards,
Maria