Improve `loadCellRanger()` to handle a single unnamed sample

Question

Improve `loadCellRanger()` to handle a single unnamed sample

mjsteinbaugh opened this issue 7 years ago · 1 comments

Currently the loadCellRanger() function depends on a directory structure of SAMPLE_ID/outs/filtered_gene_bc_matrices/GENOME for correct loading. We need to make this more flexible to support loading of a single sample with the structure filtered_gene_bc_matrices/GENOME (e.g. example 10X data).

Answer 1 · 2017-08-10T15:17:06.000Z

The internal-sampleDirs.R will be need to be updated to improve this step.