hbctraining/Intro-to-ChIPseq-flipped

Issues

• update image to say scratch3

  #57 opened 5 months ago by mistrm82
  0

• add some mention of multiQC

  #56 opened 5 months ago by mistrm82
  0

• adding string manipulation shortcut for scratch lesson

  #55 opened 5 months ago by mistrm82
  0

• remove image from alignment lesson

  #54 opened 5 months ago by mistrm82
  0

• reference paper comparing multiple peak callers

  #51 opened 5 months ago by mistrm82
  1

• Negative controls in Cut and Run

  #52 opened 5 months ago by hwick
  1

• Spike in normalization

  #53 opened 5 months ago by svbekaer
  1

• troubleshooting high blacklist hits

  #48 opened 2 years ago by mistrm82
  0

• no links for chipseq

  #50 opened a year ago by eberdan
  1

• ChIP-seq Part II workshop

  #49 opened 2 years ago by bcjonescbt
  1

• Add memory parameter in the script

  #47 opened 2 years ago by jihe-liu
  1

• link lesson on spike in normalization

  #42 opened 2 years ago by mistrm82
  2

• linking the CUT&RUN lesson

  #39 opened 2 years ago by mistrm82
  0

• have a figure for showing multi mappers vs duplicates

  #36 opened 2 years ago by mistrm82
  2

• add/update some additional refs to expt design 01 lesson

  #27 opened 2 years ago by mistrm82
  1

• adding a cross-correlation figure to peak calling

  #34 opened 2 years ago by mistrm82
  2

• need zoom polls

  #37 opened 2 years ago by mistrm82
  0

• have a figure that illustrates effective genome

  #35 opened 3 years ago by mistrm82
  0

• Filtering lesson - highlight in the materials that they need to be on a login node prior to srun

  #38 opened 2 years ago by marypiper
  2

• Lesson #9 Comments

  #33 opened 3 years ago by Gammerdinger
  1

• Lesson #8 Comments

  #30 opened 3 years ago by Gammerdinger
  0

• Lesson #7 Comments

  #29 opened 3 years ago by Gammerdinger
  1

• Lesson #5 Comments

  #24 opened 3 years ago by Gammerdinger
  1

• Lesson #6 Comments

  #26 opened 3 years ago by Gammerdinger
  5

• Introduction to ChIP-seq lecture

  #1 opened 3 years ago by mistrm82
  1

• peak calling lesson

  #9 opened 3 years ago by mistrm82
  0

• handling peak files with bedtools

  #10 opened 3 years ago by mistrm82
  1

• data visualization lesson

  #12 opened 3 years ago by mistrm82
  0

• Lesson 4 comments

  #22 opened 3 years ago by Gammerdinger
  2

• Lesson 3 Comments

  #20 opened 3 years ago by Gammerdinger
  2

• Lesson 2 comments

  #18 opened 3 years ago by Gammerdinger
  1

• Lesson 1 comments

  #16 opened 3 years ago by Gammerdinger
  4

• include greylisting in DiffBind lesson

  #6 opened 4 years ago by mistrm82
  1

• Flesh out project organization markdown

  #4 opened 3 years ago by mistrm82
  2

• Understanding the ChIP-seq workflow

  #2 opened 3 years ago by mistrm82
  0

• Create an "Aligning reads for ChIP-seq" markdown

  #7 opened 3 years ago by mistrm82
  4

• bigWig lesson

  #11 opened 3 years ago by mistrm82
  0

• Flesh out FASTQC

  #5 opened 3 years ago by mistrm82
  5

• Create a filtering reads markdown

  #8 opened 3 years ago by mistrm82
  5

• Copy over the RDM lesson from RNA-seq self-learning

  #3 opened 3 years ago by mistrm82
  1