helme/ecg_ptbxl_benchmarking

Found conflicts! Looking for incompatible packages. error

yvzkbln opened this issue · 5 comments

yvzkbln commented

When I run the "conda env create -f ecg_env.yml " command I get the following error.
Found conflicts! Looking for incompatible packages.

BraINstinct0 commented

same issue, letting the conflict solver run through to no avail

nstrodt commented

Sorry for the late response. You are right, the provided yml does not seem to work anymore (which is strange since conda should in principle avoid these kinds of conflicts). We try to set up a new conda environment soon- hopefully towards the end of this week.

  • 👍1
rsaite commented

For me, the conflict was caused by the requirement - dataclasses=0.6=py_0. What worked for me was

  1. Removing the dataclasses requirement from ecg_env.yml
  2. Running conda env create -f ecg_env.yml and activating the environment
  3. Installing dataclasses package with conda (yielding dataclasses 0.7 with automatic version selection)
helme commented

@rsaite thanks for pointing this out, currently I'm investigating the conda environment, I'll commit a updated yml file soon.

helme commented

Hi, I updated the conda environment with the minimal setup with wfdb, pytorch, torchvision, cudatoolkit, fastai, fastprogress. In addition I removed the prefix-line, header ids and the environment name. I hope this will fix your issues, just re-open the issue if this is not the case :)