This is a shiny implementation of the scfind R package for searching cell atlases by genes.
To run scfind-shiny on a Cloud please create a Docker image of it using the Dockerfile provided. Once the image is ready it can be run either locally or on a Cloud.
We have built our own image of scfind-shiny using quay.io. To run it locally:
docker run --rm -p 3838:3838 quay.io/hemberg-group/scfind-shiny:1.1.1
Then scfind-shiny will be accessible at http://localhost:3838/scfind/
To run in a detached mode on the Cloud:
docker run -d -p 80:3838 quay.io/hemberg-group/scfind-shiny:1.1.1
Then scfind-shiny will be accessible at http://YOUR_CLOUD_IP/scmap/. In our case it is https://scfind.sanger.ac.uk.
Alternatively, you can manually install a Shiny server on your instance and all corresponding R packages mentioned in the Dockerfile. You will also need to copy your scfind-shiny files to /srv/shiny-server/scfind folder.
All scfind indexes used in this app are available for browsing and downloading from here.