Code and Manuscript Files for "Automatic Differentiation Accelerates Inference for Partially-Observed Markov Processes
Thank you for reviewing the code submitted with the manuscript. The LaTeX source files for the manuscript are included in the paper/
directory. The source code for the simulations are contained in filtering.py
, optim.py
, pomps.py
, and resampling.py
, along with the three driver Jupyter notebooks used for generating the results in cholera.ipynb
, cholera_biasvar.ipynb
, and cholera_npeb.ipynb
.
Please contact the authors if you have any further questions.