FHOOE Hagenberg Bioinformatics/Proteomics Research Group
Bioinformatics/Proteomics Research Group of the FH OOE Hagenberg
Austria
Pinned Repositories
CandidateSearch
Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.
CandidateVectorSearch
Searching for peptide candidates using sparse matrix + matrix/vector multiplication.
MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker.
MSAmanda
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
MSAnnika_exporters
Export MS Annika crosslink results to different formats.
MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
MSAnnika_FDR
A script and functions to group and validate MS Annika results.
MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
FHOOE Hagenberg Bioinformatics/Proteomics Research Group's Repositories
hgb-bin-proteomics/MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
hgb-bin-proteomics/MSAmanda
MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.
hgb-bin-proteomics/MSAnnika_exporters
Export MS Annika crosslink results to different formats.
hgb-bin-proteomics/CandidateSearch
Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.
hgb-bin-proteomics/CandidateVectorSearch
Searching for peptide candidates using sparse matrix + matrix/vector multiplication.
hgb-bin-proteomics/MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker.
hgb-bin-proteomics/MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
hgb-bin-proteomics/.github
GitHub Profile
hgb-bin-proteomics/Crosslink_Utils
Helper scripts for crosslink analysis.
hgb-bin-proteomics/MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
hgb-bin-proteomics/MSAnnika_FDR
A script and functions to group and validate MS Annika results.
hgb-bin-proteomics/MSAnnika_MS3_Results
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
hgb-bin-proteomics/peptide_matching_game
Peptide Matching Game
hgb-bin-proteomics/Scout_extensions
Extensions to use the cross-linking tool Scout with other software.
hgb-bin-proteomics/CandidateVectorSearch_template
Template repository for custom backends in MS Annika.
hgb-bin-proteomics/dotnet_template
A template repository for building and testing .NET commandline applications.
hgb-bin-proteomics/MSAnnika_Combine_Results
A script to merge and optionally validate several MS Annika search results.
hgb-bin-proteomics/MSAnnika_NC_Results
Repository containing scripts used for the analysis and visualization of the results of the MS Annika 3.0 non-cleavable crosslink search.
hgb-bin-proteomics/Proteome_Discoverer_MGF_Scan_Number_Repair_Tool
A simple python script to fix scan numbers in result files generated by Proteome Discoverer.
hgb-bin-proteomics/python_template
A template repository for linting, testing, GUI building and dockerizing python scripts.