Pinned Repositories
genenotebook
A collaborative notebook for genes and genomes
react-bio-viz
React components for biological data visualization
asteroid
An alternative client for a Meteor backend
blastserver
deep_learning
introduction_to_react
Code, assignments and slides for a 50minute introduction to building web apps with react.
IOGA
Iterative Organellar Genome Assembly
parasponia_code
picea
lightweight python library for working with trees and sequence collections
taxus
Gaussian Process models for transcriptome data
holmrenser's Repositories
holmrenser/asteroid
An alternative client for a Meteor backend
holmrenser/gff_toolkit
tools for handling gff files
holmrenser/_holmrenser.github.io
Website
holmrenser/ALE
Assembly Likelihood Estimator
holmrenser/annotation_CI
Continuous integration for genomic annotations
holmrenser/Apollo
Genome annotation editor, with a Java servlet backend and a Javascript client that runs in a web browser as a JBrowse plugin
holmrenser/arcdiagram
R package arcdiagram
holmrenser/d3-force
Force-directed graph layout using velocity Verlet integration.
holmrenser/esdoc2-plugins
holmrenser/genome_annotation_toolkit
Toolkit for handling genome annotations in various formats. Python3.
holmrenser/jbrowse
A modern genome browser built with JavaScript and HTML5.
holmrenser/kegg_visualization
holmrenser/pandoc-pdf-template
A basic template to make Pandoc-generated PDFs look better.
holmrenser/picobio
Miscellaneous Bioinformatics scripts etc mostly in Python
holmrenser/scripts