holtgrewe
Data + Transistors => biomedical insight (and everything in between) @bihealth
CUBI Core Unit Bioinformatics, Berlin Institute of HealthBerlin
holtgrewe's Stars
jwasham/coding-interview-university
A complete computer science study plan to become a software engineer.
bevyengine/bevy
A refreshingly simple data-driven game engine built in Rust
google/python-fire
Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.
astral-sh/uv
An extremely fast Python package and project manager, written in Rust.
atuinsh/atuin
✨ Magical shell history
microsoft/pyright
Static Type Checker for Python
DescentDevelopers/Descent3
Descent 3 by Outrage Entertainment
mtshiba/pylyzer
A fast static code analyzer & language server for Python
le0pard/pgtune
Pgtune - tuning PostgreSQL config by your hardware
posit-dev/great-tables
Make awesome display tables using Python.
jonhoo/inferno
A Rust port of FlameGraph
urchade/GLiNER
Generalist and Lightweight Model for Named Entity Recognition (Extract any entity types from texts) @ NAACL 2024
ropensci/targets
Function-oriented Make-like declarative workflows for R
jikkenio/jikken
Jikken CLI Tool
RabadanLab/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
pachterlab/seqspec
machine-readable file format for genomic library sequence and structure
Griffan/VerifyBamID
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
kircherlab/CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
SciLifeLab/TIDDIT
TIDDIT - structural variant calling
jackh726/bigtools
A high-performance BigWig and BigBed library in Rust
TACC/launcher
A simple utility for executing multiple sequential or multi-threaded applications in a single multi-node batch job
bcgsc/straglr
Tandem repeat expansion detection or genotyping from long-read alignments
igumnoff/metatron
Metatron library: Implementation in Rust of a report generation
sarah-ek/diol
manzt/pygv
a minimal, scriptable genome browser for python
daranzolin/sqltargets
targets extension for SQL queries
IntelLabs/Open-Omics-Acceleration-Framework
Intel lab's open sourced data science framework for accelerating digital biology
abbvie-external/OmicNavigator
Open-Source Software for Omic Data Analysis and Visualization
Paul-weqe/failover
A Rust implementation of the VRRP protocol.
Daniel-Liu-c0deb0t/frfr
Parallelized Ukkonen/Myer's edit distance algorithm, fr fr.