Publication: A repository from holtzy

2021

Comparative Analysis Based on Transcriptomics and Metabolomics Data Reveal Differences between Emmer and Durum Wheat in Response to Nitrogen Starvation Romina Beleggia, Nooshin Omranian, Yan Holtz, [...], Roberto Papa. International Journal of Molecular Sciences. Paper

Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration Joana A Revez, Tian Lin, Zhen Qiao, Angli Xue, Yan Holtz, [...], Jian Yang, Naomi R Wray, John J McGrath. Nature Communication. Paper
Comparative analysis based on transcriptomics and metabolomics data reveal differences between emmer and durum wheat in response to nitrogen starvation. Romina Beleggia, Nooshin Omranian, Yan Holtz, [...], Roberto Papa. bioRxiv. Paper

A comprehensive analysis of mortality-related health metrics associated with mental disorders: a nationwide, register-based cohort study. Oleguer Plana-Ripoll, Carsten Bøcker Pedersen, Yan Holtz, [...], John J. McGrath, Thomas Laursen. The Lancet Paper Dataviz
Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication Muriel Gros‐Balthazard, Guillaume Besnard, Gautier Sarah, Yan Holtz, Julie Leclercq, Sylvain Santoni, Daniel Wegmann, Sylvain Glémin, Bouchaib Khadari. The Plant Journal. Paper
Genetic correlates of social stratification in Great Britain Abdel Abdellaoui, David Hugh-Jones, Loic Yengo, Kathryn E. Kemper, Michel G. Nivard, Laura Veul, Yan Holtz, [...], Naomi R. Wray, Jian Yang, Karin J. H. Verweij & Peter M. Visscher. Nature Human Behaviour. Web
Exploring Comorbidity Within Mental Disorders Among a Danish National Population. Oleguer Plana-Ripoll, Carsten Bøcker Pedersen, Yan Holtz, [...], John J. McGrath. JAMA Psychiatry. Web

Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison. Lisa de Mattéo, Yan Holtz, Vincent Ranwez, Sèverine Bérard. Plos One. Web, R Package
Genetic Consequences of Social Stratification in Great Britain. Abdel Abdellaoui, David Hugh-Jones, [...], Yan Holtz, [...], Peter M. Visscher. BioRxiv. Web

How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data. Nicolas O. Rode, Yan Holtz, Karine Loridon, Sylvain Santoni, Joëlle Ronfort, Laurène Gay. Molecular Ecology resources. Web
Evolutionary forces affecting synonymous variations in plant genomes. Y. Clément, G. Sarah, Y. Holtz, F. Homa, …, J. David, S. Glémin. PLOS Genetics. Web
Epistatic determinism of durum wheat to the wheat spindle streak mosaic virus (WSSMV). Y. Holtz, M. Bonnefoy, V. Viader, M. Ardisson, N. Rode, G. Poux, P. Roumet, V. Marie-Jeanne, V. Ranwez, D. Gouache, J. David . Theor Appl Genet. (2017) PDF, code, Web
The Genetic Map Comparator: A User-Friendly Application to Display and Compare Genetic Maps. Y. Holtz, J. David, V. Ranwez. Bioinformatics. Web, PDF, Online Tool

Genotyping by Sequencing using specific allelic capture to build a high-density genetic map of Durum Wheat. Y. Holtz, M. Ardisson, V. Ranwez, A. Besnard, P. Leroy, G. Poux, P. Roumet, V. Viader, S. Santoni, J. David . PLoS ONE. PDF, Web

Phénotypages de la résistance du blé dur au Wheat Spindle Streak Mosaic Virus. V. Viader, Y. Holtz, S. Santoni, V. Marie-Jeanne, J. David. Cahier des techniques de l’INRA Web

Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population. Jacques David, Yan Holtz, Vincent Ranwez, Sylvain Santoni, Gautier Sarah, Morgane Ardisson, Gérard Poux Fréderic Choulet, Clémence Genthon, Pierre Roumet, Muriel Tavaud-Pirra. Molecular Breeding Web, PDF

Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat. V Ranwez, Y Holtz, G Sarah, M Ardisson, S Santoni, S Glémin, M Tavaud-Pirra, J. David . BMC Bioinformatics. Web, PDF
New insights for estimating the genetic value of segregating apple progenies for irregular bearing during the first years of tree production. Jean-Baptiste Durand1, Baptiste Guitton, Jean Peyhardi, Yan Holtz, Yann Guédon, Catherine Trottier and Evelyne Costes. J. Exp. Bot. Web, PDF
Étude du déterminisme génétique de l’alternance du pommier. Yan Holtz. Mémoire de fin d’étude (2012). PDF
Synthesis of New Interspecific Triploid Hybrids from Natural AB Germplasm in Banana (Musa sp.). Jenny,C., Holtz Y., Horry J.P.and Bakry F. ISHS Acta Horticulturae. Web