hpcaitech/FastFold

Issues

• Could not create environment on conda

  #194 opened 3 months ago by mrazkiya
  0

• Did fastfold support bfloat16 inference?

  #165 opened 2 years ago by semal
  5

• Installation failed ERROR: No matching distribution found for typing-extensions==4.3.0

  #191 opened 7 months ago by jumpintwo
  0

• cuda error

  #186 opened 10 months ago by hhh12345678990
  0

• RuntimeError: CUDA error: CUBLAS_STATUS_INVALID_VALUE when calling `cublasGemmEx(

  #182 opened a year ago by cdsnow
  2

• Could not run demo.py

  #192 opened 7 months ago by bj600800
  1

• mmcif_cache

  #183 opened a year ago by vetmax7
  8

• Request for guidance on generating fastfold training cache files

  #190 opened 9 months ago by morou34
  1

• submit unsuccessfully

  #172 opened 2 years ago by MrGao1997
  4

• Error unrecognized argument for --uniref30_database_path

  #187 opened 9 months ago by morou34
  0

• environment.yml conda env has conflicts

  #188 opened 9 months ago by Emptyset110
  0

• AutoChunk

  #160 opened 2 years ago by georgkempf
  2

• Inferring super large protein with reduced accuracy

  #185 opened a year ago by Ian-pku
  0

• Trouble Running Perf.py in Benchmark

  #178 opened a year ago by chuhan-ouyang
  2

• About running time

  #181 opened a year ago by addsg
  0

• Buggy scripts/download_all_data.sh

  #180 opened a year ago by tiansiyuan
  0

• KeyError: 'msa_mask' Issue

  #179 opened a year ago by YoshitakaMo
  0

• Cannot run perf.py in benchmark

  #176 opened a year ago by chuhan-ouyang
  2

• Core affinity issue

  #175 opened a year ago by jpetucci
  1

• Invalid resolution format: ['?']

  #171 opened a year ago by HF06
  5

• Would it be possible to run this locally in computers/laptops with nvidia cuda drivers+docker?

  #173 opened 2 years ago by juankaamez
  3

• Multimer model scores

  #157 opened 2 years ago by s-kyungyong
  7

• No module named fastfold_layer_norm_cuda

  #170 opened 2 years ago by davidesala
  1

• Dimension mismatch for einsum() in ops.py

  #167 opened 2 years ago by daniel-dpq
  3

• Multimer training and BF16

  #168 opened 2 years ago by semal
  8

• About the recycle dimension

  #169 opened 2 years ago by semal
  1

• Homodimer prediction missing chain

  #163 opened 2 years ago by s-kyungyong
  5

• DAP seems not work with 2 gpus

  #164 opened 2 years ago by semal
  8

• local variable 'right_proj_act_rec' referenced before assignment

  #166 opened 2 years ago by semal
  1

• Differences between fastfold and alphfold about databases

  #129 opened 2 years ago by Luanxins
  1

• Allow running multiple jobs in the same node

  #159 opened 2 years ago by s-kyungyong
  1

• Issues with processing the templates

  #155 opened 2 years ago by s-kyungyong
  2

• Template all atom mask was all zeros error

  #144 opened 2 years ago by double-vin
  6

• problem with multimer mode, ValueError: Could not parse description:

  #151 opened 2 years ago by wh277
  11

• Confidence metrics

  #135 opened 2 years ago by georgkempf
  3

• TypeError in fastfold/data/templates.py

  #136 opened 2 years ago by kashyapchhatbar
  2

• Save prediction output pickle file

  #132 opened 2 years ago by kashyapchhatbar
  3

• Error when model parameters from AlphaFold v2.3.0 (multimer_v3.npz) are used

  #126 opened 2 years ago by kashyapchhatbar
  6

• wrong indentation?

  #125 opened 2 years ago by georgkempf
  1

• Function not accessible

  #123 opened 2 years ago by georgkempf
  1

• How can I test 5 models at once

  #122 opened 2 years ago by zhoujingyu13687306871
  1

• Issues after last commit

  #120 opened 2 years ago by SSchott
  1

• inference error when predicting multimer sequence

  #119 opened 2 years ago by ssn1771
  5

• CUDA out of memory

  #115 opened 2 years ago by zzy221127
  1

• fatal error: cuda.h: No such file or directory

  #114 opened 2 years ago by zzy221127
  7

• pdb_seqres.txt parse error when execute hmmsearch

  #113 opened 2 years ago by ssn1771
  2

• Is the use of template a must for running FastFold?

  #111 opened 2 years ago by kwanUm
  1

• Template all atom mask was all zeros error

  #106 opened 2 years ago by dominik-handler
  3

• Ray storage dir cannot be created

  #107 opened 2 years ago by dominik-handler
  1

• compare the predicted and actual structure

  #102 opened 2 years ago by mukulem
  5