huangnengCSU/compleasm

Issues

• compleasm protein mode finding multiple BUSCOs in same mRNA

  #34 opened 8 months ago by jbh-cas
  0

• Protein IndexError: list index out of range

  #40 opened 2 months ago by gotouerina
  4

• [Feature Request] Provide support for PyHMMER

  #37 opened 4 months ago by jolespin
  9

• run compleasm as array job

  #39 opened 2 months ago by Overcraft90
  2

• mammalian database

  #21 opened 2 months ago by sanjin725
  3

• arthropoda_odb10 same BUSCOs for multiple assemblies

  #35 opened 2 months ago by katiecdillon
  4

• For the evaluation of a very large genome, there is a significant difference between Compleasm and BUSCO

  #38 opened 4 months ago by GLking123
  0

• Feature request: BUSCO-formatted output

  #24 opened 10 months ago by schorlton
  1

• Different duplicated genes of compleasm and BUSCO

  #33 opened 8 months ago by shehongbing
  0

• socket.gaierror: [Errno -2] Name or service not known

  #30 opened 9 months ago by yeeus
  5

• Error - download submodule

  #20 opened 9 months ago by rlibouba
  5

• Can't read the genome sequence

  #26 opened 9 months ago by zhidaobuzhidao
  2

• how to evaluate more than one genome assembly

  #29 opened 9 months ago by Jerry-bioinformatics
  4

• What's the difference between compleasm run and busco --miniprot?

  #27 opened 9 months ago by juanjo255
  1

• zero frameshifts report when using miniprot > 0.10

  #28 opened 9 months ago by huangnengCSU
  0

• Does compleasm try to download something when run specifying lineage?

  #6 opened a year ago by olekto
  10

• compleasm download error

  #25 opened 9 months ago by ChuanzhengWei
  1

• version info

  #22 opened 10 months ago by jbh-cas
  2

• md5 hash is incorrect: 8f6c62320cd30f8017af530cbb099536 while 8f6c62320cd30f8017af530cbb099536 file_versions.tsv expected

  #23 opened 10 months ago by dukecomeback
  2

• compleasm after annotation

  #15 opened a year ago by ardy20
  1

• Different stats for protein mode

  #18 opened a year ago by arslan9732
  2

• compleasm output also cds nucleotide sequences for the final set of genes

  #19 opened a year ago by estolle
  3

• compress hmmer output

  #17 opened a year ago by dirkjanvw
  1

• Python regex syntax warning

  #16 opened a year ago by aflaus
  0

• Error miniprot

  #14 opened a year ago by rlibouba
  3

• Input translated protein sequences?

  #13 opened a year ago by charlesfoster
  2

• KeyError: 'Target_Species'

  #12 opened a year ago by larsmoret
  10

• Documentation of summary output

  #11 opened a year ago by pgonzale60
  2

• Please, make Compleasm being able to use the second URL of BUSCO data

  #8 opened a year ago by shelkmike
  2

• "I" value

  #9 opened a year ago by theo-allnutt-bioinformatics
  3

• Exception: miniprot exited with non-zero exit code: -9

  #10 opened a year ago by cbortoluzzi
  10

• Summary file output

  #5 opened a year ago by aabaricalla
  2

• KeyError: 'Target_species'

  #7 opened a year ago by N0s3n
  4

• an error in busco mode

  #2 opened a year ago by wq-ls
  6

• whether compleasm can be used for the evaluation of cds or pep?

  #4 opened a year ago by zhangwenda0518
  1

• Error in lineage

  #3 opened a year ago by mohamadi
  1