Use new column names for biomarkers
Closed this issue · 3 comments
bherr2 commented
Biomarker columns will now be named according to the mapping below.
- In the ASCT+B API support the old naming B
x
, but also support the new mapping as below. This should be a server only change. - Update data format markdown docs to reflect this.
Mapping:
- Proteoform → BProteoform (NEW)
- Lipid —> BLipid (NEW)
- Metabolite —> BMetabolite (NEW)
- Protein —> BProtein (Renamed from OLD BP)
- Gene —>BGene (Renamed from OLD BG)
bherr2 commented
This should be as easy as adding new mappings to: https://github.com/hubmapconsortium/ccf-asct-reporter/blob/main/asctb-api/src/index.ts#L69-L78
vutukuriajay2241 commented
Done
vutukuriajay2241 commented
will give a commit in 5 mins