how can I get 47 haplotype resolved Variant file ?

[Chenglin20170390]

 Hi , 

I want to used 47 haplotype resolved Variant file including SNVs and SVs, but I don't know where to download ? 

Can you help me to find the address to download the VCF file  of  47 haplotype resolved genome?

Thanks, Lin

[glennhickey]

Hi, Can you be a little more specific? This repo contains links to several VCFs constructed from the haplotype resolved genomes, along with descriptions of how they were produced (with full details in the manuscript)

https://github.com/human-pangenomics/hpp_pangenome_resources

If your question is why there aren't exactly 47 samples in the VCFs, that is answered here:

https://github.com/human-pangenomics/hpp_pangenome_resources#assembly-inputs

[Chenglin20170390]

Ok,thanks