huyustats/SCATS

Readme is incorrect

Closed this issue · 2 comments

in your README

python SCATS.py -task group -ref example.refgene -out example.gpinfo

should be

python SCATS.py -task group -refgene example.refgene -out example.gpinfo

via

python SCATS.py -task group
SCATS.py -task group -refgene <refgene_file> -out <output_file>

Further this section is incorrect as well


-umi yes -onebam -yes: UMI and cell barcode tag names have to be specified in the 4th and 5th columns of metafile.
-umi yes -onebam -no: only UMI barcode tag name is needed. It has to be specified in the 4th column of metafile.
-umi no -onebam -yes: only cell barcode tag name is needed. It has to be specified in the 4th column of metafile.
-umi no -onebam -no: no tag name is needed.```

there should not be `-` before no and yes

I have fixed the typo. Thank you!