Cannot start R when run VisR
Abby-Michigan opened this issue · 0 comments
Run VisR as adiministrator and got the log as following:
F:\Single cell seq analysis tool\VisR.0.9.42\VisR.0.9.42>java -jar VisR.jar
Checking for updates
Response Code : 200
Up to date.
Fetching user directory... INFO [2020-02-10 22:33:32,519] [DirectoryManager.java:139] [main] Application Directory: C:\Users\Lin\VisR
java.awt.Dimension[width=300,height=650]
java.awt.Dimension[width=145,height=40]
java.awt.Dimension[width=350,height=325]
C:\Program Files (x86)\Common Files\Oracle\Java\javapath;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Program Files (x86)\Common Files\Oracle\Java\javapath;C:\Rtools\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\Intel\WiFi\bin;C:\Program Files\Common Files\Intel\WirelessCommon;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0;C:\WINDOWS\System32\OpenSSH;C:\Program Files\ITK-SNAP 3.8\bin;C:\Users\Lin\AppData\Local\Microsoft\WindowsApps;.
INFO [2020-02-10 22:33:35,140] [StartRserve.java:335] [main] First connect try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:35,141] [StartRserve.java:185] [main] Windows: query registry to find where R is installed ...
INFO [2020-02-10 22:33:35,142] [StartRserve.java:189] [main] reg query HKLM\Software\R-core\R
INFO [2020-02-10 22:33:35,206] [StartRserve.java:58] [Thread-3] R InstallPath = C:\Program Files\R\R-3.6.1
INFO [2020-02-10 22:33:35,213] [StartRserve.java:116] [main] waiting for Rserve to start ... (java.lang.ProcessImpl@3514a4c0)
INFO [2020-02-10 22:33:35,214] [StartRserve.java:146] [main] let us try to connect ...
INFO [2020-02-10 22:33:35,440] [StartRserve.java:61] [Thread-5] Rserve> _
INFO [2020-02-10 22:33:35,441] [StartRserve.java:61] [Thread-5] Rserve> platform x86_64-w64-mingw32
INFO [2020-02-10 22:33:35,441] [StartRserve.java:61] [Thread-5] Rserve> arch x86_64
INFO [2020-02-10 22:33:35,441] [StartRserve.java:61] [Thread-5] Rserve> os mingw32
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> system x86_64, mingw32
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> status
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> major 3
INFO [2020-02-10 22:33:35,442] [StartRserve.java:61] [Thread-5] Rserve> minor 6.1
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> year 2019
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> month 07
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> day 05
INFO [2020-02-10 22:33:35,443] [StartRserve.java:61] [Thread-5] Rserve> svn rev 76782
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> language R
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> version.string R version 3.6.1 (2019-07-05)
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> nickname Action of the Toes
INFO [2020-02-10 22:33:35,444] [StartRserve.java:61] [Thread-5] Rserve> [1] "getwd(): F:/Single cell seq analysis tool/VisR.0.9.42/VisR.0.9.42"
INFO [2020-02-10 22:33:35,464] [StartRserve.java:61] [Thread-4] Rserve> Error in loadNamespace(name) : 不存在叫'assertthat'这个名字的程辑包
INFO [2020-02-10 22:33:35,465] [StartRserve.java:61] [Thread-4] Rserve> Calls: source ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
INFO [2020-02-10 22:33:35,465] [StartRserve.java:61] [Thread-4] Rserve> 停止执行
INFO [2020-02-10 22:33:37,218] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:39,722] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:42,227] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:44,731] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
INFO [2020-02-10 22:33:47,235] [StartRserve.java:159] [main] Try failed with: Cannot connect: Connection refused: connect
Cannot load R.