Pinned Repositories
azure-redcap-paas
Automated deployment of REDCap with Azure Blob storage as the storage back-end
cv-sibc
Public CV
datasharing
The Leek group guide to data sharing
Developing_Data_Products
Developing Data Products Course from the Johns Hopkins Data Science Lab
gatk4-exome-analysis-pipeline
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
Genetics
R & Shell scripts to facilitate analysis of family-based genetic data
github_rstudio
Demonstration of RStudio Project Creation and Github Repository Creation for Reproducible Research
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
icbs_gatk
ICBS GATK Workflow
singhail
Singularity Container for Hail (hail.is)
hypotheses's Repositories
hypotheses/Genetics
R & Shell scripts to facilitate analysis of family-based genetic data
hypotheses/icbs_gatk
ICBS GATK Workflow
hypotheses/singhail
Singularity Container for Hail (hail.is)
hypotheses/azure-redcap-paas
Automated deployment of REDCap with Azure Blob storage as the storage back-end
hypotheses/cv-sibc
Public CV
hypotheses/datasharing
The Leek group guide to data sharing
hypotheses/Developing_Data_Products
Developing Data Products Course from the Johns Hopkins Data Science Lab
hypotheses/gatk4-exome-analysis-pipeline
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
hypotheses/github_rstudio
Demonstration of RStudio Project Creation and Github Repository Creation for Reproducible Research
hypotheses/handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
hypotheses/imputationserver
TOPMED Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
hypotheses/pathscan
An easy to use tool to identify pathogenic variants in genomic data; identifies variants listed as pathogenic in ClinVar that the ACMG recommendation implies should be incidental, reportable findings from VCFs, Complete Genomics variant files, and 23andMe SNP reports.
hypotheses/redcap-docker
Dockerfile for building REDCap a secure web application for building and managing online surveys and databases. http://www.project-redcap.org/
hypotheses/redcap-docker-compose
A docker-compose script for building REDCap with Mailhog
hypotheses/REDCap-Hooks
This is a framework for deploying hooks in REDCap on a global or per-project basis.
hypotheses/redcap_data_dictionary
Shared REDCap Data Dictionary
hypotheses/seq-format-conversion
Workflows for converting between sequence data formats
hypotheses/SIBB512-R
Introduction to R for Molecular Biologists
hypotheses/surviving-singularity
Singularity Survival Guide
hypotheses/terms_conditions
Repository for Accepted Terms and Conditions from Various Companies
hypotheses/training-data-analyst
Labs and demos for courses for GCP Training (http://cloud.google.com/training).