icgc-argo/argo-docs

Update Software Release Notes on ARGO doc site

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Buwujiu commented

Detailed Description

  1. Update the first paragraph in the software release.md to:

An ARGO software release is a set of new features and bug fixes for the ARGO Data Platform. The release notes here describe the major releases. We also release minor fixes and enhancements approximately once a month.

  1. Add the following paragraphs to the software release.md:

January 30, 2023: RNA Seq Data View

Data Platform - 1.119.1 - API 3.38.1

New Features

A new RNA-SEQ table has been released in the Dashboard. This table is accessible from the Program Dashboard by clicking on the RNA-SEQ tab. The table includes:

  • A Registered Samples column that displays the number of registered tumour and normal RNA samples.
  • A Raw Reads column that displays the number of submitted tumour and normal RNA raw reads.
  • An Alignment column that displays the number of RNA SEQ Alignment workflow categorized by workflow status.
  • An Alerts column that signals any errors in the submitted clinical data that need to be updated.
  • A Last Updated column that displays the most recent date that the RNA data is updated.

New filters have been released in the Dashboard - DNA SEQ table. Users can now filter DNA Registered Samples and Raw Reads by more granular criteria.

Bug Fixes

  • The UI global loader has been improved so that it works consistently on all pages.
  • Some Program Dashboard bugs have been fixed allowing the correct DNA pipeline data to be reported on the molecular summary chart and the donor summary table.

Aug. 17, 2022
Data Platform - 1.110.1 - API 3.34.1
New Features

  • Due to the complex nature of Surgery clinical table validation rules, we have updated and enhanced clinical validation error messages in Surgery tables to further assist data submission.

July.1, 2022
Data Platform - 1.110.1 - API 3.32.1
New Features​

  • Data submitters can now submit supplemental surgery data for donors that have this specified treatment in the new Surgery clinical table.

    • The Surgery table is a collection of data elements related to a donor's surgical treatment at a specific point in the clinical record.
    • To submit a Surgery file, simply go to the Submit Clinical Data page and upload a Surgey.tsv file.
    • To submit multiple surgeries, submit multiple rows in the Surgery file.
    • If a specimen was resected during surgery, indicate the unique identifier of the specimen in the 'submitter_specimen_id' field. If multiple specimens were resected during a single surgical procedure, submit each 'submitter_specimen_id' as a new row with the same 'submitter_treatment_id' and 'surgery_type' values.

Enhancement

  • The Genome Build property on the file entity page is now updated to ‘GRCh38DH’. The link is also updated to the specific versions of reference genomes used in the process.
Buwujiu commented

Preview: https://deploy-preview-538--argo-docs.netlify.app/docs/release-notes/software-releases.
Will deploy after all services are deployed to prod.
TODO :

  • update the software release ui and api versions
  • update the release date