New tag to be used for per-server configuration
Closed this issue · 8 comments
There is new dbtag_hss keyword in each record of type_s:substance. The goal of this tag to serve as a key for predefined set of server specific settings , denoting the database of origin (e.g. ENM; enanomapper; CANANOLAB: caNanoLab; etc). These should be configurable, not hardcoded. A default configuration should be defined as well.
{
"SUMMARY.SIZE_hss":["34.0 nm",
"140.0 nm"],
"dbtag_hss":["ENM"],
"name_hs":"JRC2011 NM-111",
"publicname_hs":"NM-111",
"owner_name_hs":"NanoWiki",
"substanceType_hs":"NPO_1542",
"s_uuid_hs":"NWKI-4beee533-65e4-364a-adb7-7a520180de61",
"type_s":"substance",
"SUMMARY.RESULTS_hss":["P-CHEM.PC_GRANULOMETRY_SECTION",
"P-CHEM.SPECIFIC_SURFACE_AREA_SECTION",
"P-CHEM.SURFACE_CHEMISTRY_SECTION"],
"SUMMARY.REFOWNERS_hss":["NanoWiki"],
"id":"caac146b-7916-4e5a-bec9-95d15e2e97af",
"_version_":1559695868501688321},
{
"content_hss":["https://cananolab.nci.nih.gov/caNanoLab/#/sample?sampleId=15368204"],
"dbtag_hss":["CANANOLAB"],
"name_hs":"DWU_SNU_SU_US-EParkTL2008-01",
"publicname_hs":"DWU_SNU_SU_US-EParkTL2008-01",
"owner_name_hs":"10.1016/j.toxlet.2008.06.869",
"substanceType_hs":"NPO_1541",
"s_uuid_hs":"CNLB-5bf1894c-76a9-4a75-9a51-d2da8cec9aed",
"type_s":"substance",
"SUMMARY.RESULTS_hss":["TOX.BAO_0002993_SECTION",
"TOX.BAO_0002168_SECTION",
"TOX.Targeting"],
"SUMMARY.REFS_hss":["http://iopscience.iop.org/1749-4699/6/1/014010/article/"],
"SUMMARY.REFOWNERS_hss":["caNanoLab"],
"id":"8053bef6-117b-4bce-86b4-8cad364cac84",
"_version_":1559695895231987712},
The configuration should specify at least : the URI of the data server and an icon , e.g.
"ENM" : {
"server" : "https://data.enanomapper.net",
"icon" : "enmlogo.png"
},
"CANANOLAB" : {
"server" : "https://apps.ideaconsult.net/enmtest",
"icon" : "anotherlogo.png"
},
....
The server URI should be used to construct the links , as well as any AMBIT queries involved. Note the export functionality will need to talk to more than one AMBIT server.
Please proceed with implementation (ASAP)
pls add support for icons, defined by the tag
icons are fine, but click on the icon always go for the default ambit server; please modify to use the configured one
The dbtag functionality is lost with the recent update by @thejonan . Apart from icons, and most important, the links do not point to the right server, e.g. in https://search.data.enanomapper.net/nanoreg2 NanoTest materials links point to nanoreg1 server, which is not correct. Please take care to fix the regression.
looks like dbs tag was changed to tagDbs in jToxKit, but existing configurations were not updated. With tag update the previous functionality is restored.
Click on the icon still needs to be fixed
That one should be fixed too.
confirmed