Pinned Repositories
babelgene
bamkin
Sample contamination/relationship analysis
clustermole
Unbiased single-cell transcriptomic data cell type identification
genomics
A collection of scripts and notes related to genomics and bioinformatics
msigdbr
MSigDB gene sets for multiple organisms in a tidy data format
nichexplorer
An interactive query and visualization tool for populations of the bone marrow niche
reference-genomes
Reference sequences and annotation files for commonly analyzed organisms
sns
Analysis pipelines for genomic sequencing data
tutorials
igordot's Repositories
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
igordot/msigdbr
MSigDB gene sets for multiple organisms in a tidy data format
igordot/sns
Analysis pipelines for genomic sequencing data
igordot/clustermole
Unbiased single-cell transcriptomic data cell type identification
igordot/babelgene
igordot/bamkin
Sample contamination/relationship analysis
igordot/reference-genomes
Reference sequences and annotation files for commonly analyzed organisms
igordot/tutorials
igordot/scooter
single-cell RNA-seq analysis pipeline
igordot/phenomenalist
Analysis Toolkit for PhenoCycler (CODEX) Data in R
igordot/copynumber
Bioconductor copynumber package with hg38 and mm10
igordot/awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
igordot/seurat5
R toolkit for single cell genomics
igordot/bagel
BAGEL software
igordot/BetterChatGPT
An amazing UI for OpenAI's ChatGPT
igordot/clustermole-gui
igordot/diffcyt
R package for differential discovery analyses in high-dimensional cytometry data
igordot/dplyr
dplyr: A grammar of data manipulation
igordot/hpcmed
igordot/igordot
Repository used for GitHub profile
igordot/igordot.r-universe.dev
R-universe subdomain
igordot/just-the-docs
A modern, high customizable, responsive Jekyll theme for documention with built-in search.
igordot/leiden
Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
igordot/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
igordot/numbat
Haplotype-aware CNV analysis in scRNA-Seq
igordot/presto
Fast Wilcoxon and auROC
igordot/setup-miniconda
Set up your GitHub Actions workflow with conda via miniconda
igordot/singleCellTK
Interactively Analyze scRNA-Seq Data
igordot/STvEA
Spatially-resolved Transcriptomics via Epitope Anchoring
igordot/varnisch